Let me put it to you this way...
Once about a year or so ago I was sampling my already finished traditional high gravity BOMM ... coming in at about 17-18% after a step-feeding process that amazingly took Wyeast 1388 to new heights that I never thought possible. I was testing blends with sweet JAOM and cider blends (by the way, JAOM and a nice dry tart cider...yum I think that's called a honey badger or a snakebite or something) ANYWAY... I was wasted and I had an active ferment going in a bucket. So I staggered over to the shelf, got the thief and carefully sanitized it, rinsed etc... then carefully walked over to the bucket with the thief in the sanitized beaker, carefully took the thief out of the sanitized beaker and slowly put it in the foaming bucket.
Then I don't know what happened and I dropped the stupid thief in the bucket. And then guess what i did? Yep, reached in with my bacteria riddled arm and searched the bottom of the bucket until I found it and pulled it out. Should have left it in there. I had 16 pounds of Orange Blossom honey in there along with spring water and $8 worth of yeast!!!
Guess what.... despite all the doom and gloom I professed the next day, I kept feeding and degassing as normal all the while fearing that the next day I would open the bucket and get a blast of cabbage or sulfur or some other off odor, but it kept chugging along until a few days later, it hit 1.004 and stopped. Tasted fine the whole time.
So don't panic... don't do anything different unless you start smelling or tasting something awful. You're probably fine as long as you followed a good cleaning and sanitation protocol and your concern about a paltry two inches of possibly tainted glass tells me you have.